These Carrot Cake Muffins with Cheesecake Filling are a delightful treat that combines the warmth of spiced carrot cake with the creamy indulgence of cheesecake. Perfect for breakfast, brunch, or dessert, they are sure to impress at any gathering. With each bite, you’ll experience the comforting flavors of cinnamon and nutmeg alongside a luscious, creamy center.

Jump to:
- Why You’ll Love This Recipe
- Tools and Preparation
- Essential Tools and Equipment
- Importance of Each Tool
- Ingredients
- For the Muffins
- For the Cheesecake Filling
- How to Make Carrot Cake Muffins with Cheesecake Filling
- Step 1: Prepare the Filling
- Step 2: Make the Muffins
- Step 3: Assemble Muffins
- Step 4: Bake
- How to Serve Carrot Cake Muffins with Cheesecake Filling
- Pair with Coffee or Tea
- Serve with Fresh Fruit
- Top with Cream Cheese Frosting
- Enjoy with Ice Cream
- Create a Brunch Platter
- How to Perfect Carrot Cake Muffins with Cheesecake Filling
- Best Side Dishes for Carrot Cake Muffins with Cheesecake Filling
- Common Mistakes to Avoid
- Storage & Reheating Instructions
- Refrigerator Storage
- Freezing Carrot Cake Muffins with Cheesecake Filling
- Reheating Carrot Cake Muffins with Cheesecake Filling
- Frequently Asked Questions
- Can I substitute ingredients in Carrot Cake Muffins with Cheesecake Filling?
- How do I know when my muffins are baked?
- Can I make these muffins gluten-free?
- What is the best way to serve Carrot Cake Muffins with Cheesecake Filling?
- How long do leftovers last?
- Final Thoughts
- 📖 Recipe Card
Why You’ll Love This Recipe
- Moist and Flavorful: The grated carrots and warm spices make these muffins incredibly moist and bursting with flavor.
- Easy to Make: Simple steps ensure even novice bakers can whip up these delicious muffins without hassle.
- Versatile for Any Occasion: Whether it’s a cozy morning at home or a festive gathering, these muffins fit right in.
- Creamy Cheesecake Center: The surprise filling elevates these muffins from ordinary to extraordinary.
Tools and Preparation
To make these Carrot Cake Muffins with Cheesecake Filling successfully, you’ll need a few essential tools in your kitchen.
Essential Tools and Equipment
- Muffin pan
- Mixing bowls
- Whisk
- Measuring cups and spoons
- Rubber spatula
Importance of Each Tool
- Muffin pan: This is crucial for shaping your muffins perfectly. It ensures they bake evenly and hold their form.
- Mixing bowls: Using separate bowls for wet and dry ingredients helps in achieving the right consistency without overmixing.

Ingredients
For the Muffins
- 1 ½ cups all-purpose flour
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon salt
- 1 teaspoon ground cinnamon
- ½ teaspoon ground nutmeg
- ¼ teaspoon ground ginger
- ½ cup vegetable oil (or canola oil)
- ½ cup brown sugar, packed
- ¼ cup granulated sugar
- 2 large eggs, room temperature
- 1 teaspoon vanilla extract
- 1 ½ cups finely grated carrots (about 2 medium carrots)
- ½ cup crushed pineapple, drained (optional, for extra moisture)
- ½ cup chopped walnuts or pecans (optional)
For the Cheesecake Filling
- 8 oz cream cheese, softened
- ¼ cup granulated sugar
- 1 teaspoon vanilla extract
- 1 egg yolk
How to Make Carrot Cake Muffins with Cheesecake Filling
Step 1: Prepare the Filling
- In a medium bowl, beat together the cream cheese, sugar, vanilla, and egg yolk until smooth and creamy.
- Set aside in the fridge while you prepare the muffin batter.
Step 2: Make the Muffins
- Preheat your oven to 350°F (175°C). Line a 12-cup muffin pan with paper liners or grease well.
- In a medium bowl, whisk together flour, baking powder, baking soda, salt, cinnamon, nutmeg, and ginger.
- In a large bowl, whisk together oil, brown sugar, granulated sugar, eggs, and vanilla until smooth.
- Stir in grated carrots (add pineapple if using).
- Gradually fold in the dry ingredients until just combined; do not overmix.
- Gently stir in nuts if using.
Step 3: Assemble Muffins
- Fill each muffin cup with about 2 tablespoons of batter.
- Add 1 tablespoon of cheesecake filling into each center.
- Cover with another spoonful of batter until cups are about ¾ full.
Step 4: Bake
- Bake for 20–25 minutes or until a toothpick inserted into the muffin (avoiding the cheesecake center) comes out clean.
- Cool in the pan for 5 minutes before transferring to a wire rack.
Enjoy your delicious Carrot Cake Muffins with Cheesecake Filling!
How to Serve Carrot Cake Muffins with Cheesecake Filling
Carrot Cake Muffins with Cheesecake Filling are versatile and can be enjoyed in various ways. Whether you want a simple breakfast or a delightful dessert, these muffins can fit any occasion perfectly.
Pair with Coffee or Tea
- A warm cup of coffee or tea complements the spices in the muffins beautifully, enhancing their flavors for a cozy treat.
Serve with Fresh Fruit
- Fresh fruit like berries or sliced oranges adds brightness and balances the richness of the cheesecake filling.
Top with Cream Cheese Frosting
- For an extra indulgent experience, drizzle cream cheese frosting over the warm muffins for added sweetness.
Enjoy with Ice Cream
- Pairing these muffins with a scoop of vanilla ice cream creates a delicious dessert that is hard to resist.
Create a Brunch Platter
- Arrange muffins on a platter alongside other brunch favorites like fresh pastries and yogurt for an inviting spread.
How to Perfect Carrot Cake Muffins with Cheesecake Filling
Making perfect Carrot Cake Muffins with Cheesecake Filling is easier than it seems. Follow these tips to ensure your muffins turn out delicious every time.
- Use Room Temperature Ingredients: Make sure your eggs and cream cheese are at room temperature for better mixing and texture.
- Don’t Overmix the Batter: Gently fold the dry ingredients into the wet mixture until just combined to keep the muffins light and fluffy.
- Shred Carrots Finely: Finely grated carrots will bake more evenly and blend seamlessly into the muffin batter.
- Check Doneness Early: Start checking your muffins a few minutes before the suggested baking time to avoid overbaking.
- Cool Before Storing: Allow muffins to cool completely before storing them in an airtight container to maintain moisture.
Best Side Dishes for Carrot Cake Muffins with Cheesecake Filling
These muffins are delightful on their own but can also be complemented by some tasty side dishes. Here are some great options to consider:
- Greek Yogurt: Serve plain or flavored Greek yogurt alongside for added creaminess and protein.
- Fruit Salad: A refreshing fruit salad adds color and freshness, balancing out the sweetness of the muffins.
- Chia Seed Pudding: This healthy option offers a unique texture that pairs well with baked goods.
- Nut Butter Spread: Spread almond or peanut butter on top for a nutty flavor that enhances every bite.
- Granola Parfait: Layer granola with yogurt and fruit for a crunchy contrast to the soft muffin texture.
- Savory Cheese Platter: A selection of cheeses can offer a rich contrast that enhances the flavors of your muffin.
Common Mistakes to Avoid
When making Carrot Cake Muffins with Cheesecake Filling, it’s easy to make a few common errors that can affect the outcome. Here are some mistakes to watch out for:
- Not measuring ingredients properly: Accurate measurements are crucial in baking. Use dry measuring cups for flour and sugar and liquid measuring cups for oil and eggs.
- Overmixing the batter: Mixing too much can lead to dense muffins. Mix until just combined; it’s okay if there are a few lumps.
- Skipping the filling chill time: Not chilling the cheesecake filling can cause it to spread too much while baking. Make sure to refrigerate it until ready to use.
- Underbaking or overbaking: Keep an eye on the baking time. Insert a toothpick into the muffin base to check; it should come out clean, avoiding the cheesecake center.
- Ignoring ingredient temperature: Using cold eggs or cream cheese can affect the batter’s texture. Allow them to reach room temperature before mixing.
- Not testing for doneness: Always test your muffins before removing them from the oven. If they look done but a toothpick comes out wet, they need more time.

Storage & Reheating Instructions
Refrigerator Storage
- Store in an airtight container.
- Keep in the fridge for up to 4 days for optimal freshness.
Freezing Carrot Cake Muffins with Cheesecake Filling
- Place cooled muffins in a freezer-safe container.
- They can be frozen for up to 2 months. Thaw overnight in the fridge before enjoying.
Reheating Carrot Cake Muffins with Cheesecake Filling
- Oven: Preheat to 350°F (175°C) and warm muffins for about 10 minutes.
- Microwave: Heat one muffin at a time for about 15-20 seconds until warm.
- Stovetop: Place muffins in a skillet over low heat with a lid on, warming gently for about 5 minutes.
Frequently Asked Questions
Here are some common questions about making Carrot Cake Muffins with Cheesecake Filling:
Can I substitute ingredients in Carrot Cake Muffins with Cheesecake Filling?
Yes, you can replace nuts with seeds or omit them entirely. You can also use applesauce instead of oil for a lighter version.
How do I know when my muffins are baked?
Insert a toothpick into the muffin base; it should come out clean, except for any cheesecake filling that might cling to it.
Can I make these muffins gluten-free?
Absolutely! Substitute all-purpose flour with a gluten-free blend that measures cup-for-cup.
What is the best way to serve Carrot Cake Muffins with Cheesecake Filling?
Enjoy them warm or at room temperature as a delightful snack or dessert. A light dusting of powdered sugar adds extra sweetness!
How long do leftovers last?
Leftover muffins can be stored in an airtight container in the fridge for up to 4 days, or frozen for up to 2 months.
Final Thoughts
These Carrot Cake Muffins with Cheesecake Filling are not only delicious but also versatile enough for breakfast, brunch, or dessert. Feel free to customize them by adding your favorite fruits or nuts. Give this recipe a try, and enjoy every bite of this delightful treat!
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📖 Recipe Card
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Carrot Cake Muffins with Cheesecake Filling
- Total Time: 40 minutes
- Yield: Approximately 12 muffins 1x
Description
Indulge in the delightful flavors of Carrot Cake Muffins with Cheesecake Filling, a perfect blend of moist carrot cake and creamy cheesecake. These muffins are a wonderful addition to breakfast, brunch, or dessert tables, impressing guests with their spiced aroma and luscious center. Each bite offers a harmonious balance of cinnamon and nutmeg, complemented by a surprising cheesecake filling that elevates these muffins from ordinary to extraordinary. Easy to make and even easier to enjoy, this recipe is sure to become a family favorite.
Ingredients
- 1 ½ cups all-purpose flour
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon salt
- 1 teaspoon ground cinnamon
- ½ cup vegetable oil
- ½ cup brown sugar
- ¼ cup granulated sugar
- 2 large eggs
- 1 teaspoon vanilla extract
- 1 ½ cups finely grated carrots
- ½ cup crushed pineapple, drained (optional)
- ½ cup chopped walnuts or pecans (optional)
- 8 oz cream cheese, softened
- ¼ cup granulated sugar (for filling)
- 1 egg yolk
Instructions
- Preheat oven to 350°F (175°C) and prepare muffin pan.
- In a medium bowl, whisk together flour, baking powder, baking soda, salt, cinnamon, nutmeg, and ginger.
- In a large bowl, whisk together oil, brown sugar, granulated sugar, eggs, and vanilla until smooth.
- Stir in grated carrots (add pineapple if using).
- Gradually fold in the dry ingredients until just combined; do not overmix.
- Gently stir in nuts if using.
- In a medium bowl, beat together the cream cheese, sugar, and egg yolk until smooth and creamy.
- Fill muffin cups with about 2 tablespoons of batter, add 1 tablespoon of cheesecake filling into each center, then cover with another spoonful of batter until cups are about ¾ full.
- Bake for 20–25 minutes or until a toothpick inserted into the muffin comes out clean.
- Cool in the pan for 5 minutes before transferring to a wire rack.
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin (75g)
- Calories: 210
- Sugar: 12g
- Sodium: 180mg
- Fat: 10g
- Saturated Fat: 2g
- Unsaturated Fat: 7g
- Trans Fat: 0g
- Carbohydrates: 29g
- Fiber: 1g
- Protein: 3g
- Cholesterol: 30mg